group | C4-11 | C4-2 | C8-1 | C8-2 | C12-1 | C12-1 | C20-1 | C20-2 |
QC Assessment | ||||||||
Q20 | 99.38 | 99.32 | 98.32 | 99.43 | 99.55 | 99.58 | 98.95 | 98.52 |
Q30 | 89.51 | 89.11 | 87.59 | 88.27 | 91 | 90.98 | 88.45 | 86.83 |
GC | 51.5 | 51.5 | 48 | 44 | 47.5 | 47.5 | 41.5 | 49.5 |
Alignment | ||||||||
Total input reads | 8,143,779 | 7,666,869 | 5,168,767 | 1,243,689 | 6,537,159 | 3,997,637 | 3,926,078 | 3,416,860 |
Average input read length | 152 | 152 | 152 | 152 | 152 | 152 | 152 | 152 |
Unique Reads | ||||||||
Uniquely mapped reads | 7,355,633 | 6,962,959 | 460,894 | 587,890 | 3,901,494 | 3,282,054 | 3,259,942 | 987,401 |
% of uniquely mapped reads | 90.32% | 90.82% | 8.92% | 47.27% | 59.68% | 82.10% | 83.03% | 28.90% |
Chimeric Reads | ||||||||
Number of chimeric reads | 66,757 | 76,750 | 2608 | 5456 | 49,003 | 42,488 | 27,970 | 8691 |
% of chimeric reads | 0.82% | 1.00% | 0.05% | 0.44% | 0.75% | 1.06% | 0.71% | 0.25% |