| Parameters | Setting |
| The threshold of compounds | 62 |
| The threshold of proteins | 744 |
| Learing rate | 0.0001 |
| Weight decay | 0.0001 |
| Batch size | 8 |
| Epoch | 200 |
| CNN1 Filter (Compounds) | [3, 6, 9] |
| CNN2 Filter (Compounds) | [4, 6, 8] |
| CNN3 Filter (Proteins) | [2, 8, 14] |
| CNN4 Filter (Proteins) | [4, 8, 12] |
| Early stopping epoch | 20 |