samples | software | contig N50 (bp) | mean of contig length (bp) | median of contig length (bp) | max contig length (bp) | contig number of over 1000 bp | total contig number | ratio of contig over 1000 bp to total contig |
CW2-1 (PE125) | SOAPdenovo | 276 | 179 | 138 | 1484 | 2 | 2882 | 0.07% |
Trinity | 321 | 325 | 277 | 8469 | 198 | 23,571 | 0.84% | |
IDBA-UD | 425 | 422 | 387 | 3661 | 26 | 1737 | 1.50% | |
CW2-2 (PE125) | SOAPdenovo | 277 | 178 | 135 | 1702 | 3 | 3082 | 0.10% |
Trinity | 322 | 324 | 278 | 8160 | 1138 | 47,198 | 2.41% | |
IDBA-UD | 426 | 425 | 389 | 3101 | 23 | 1811 | 1.27% | |
Chang-1 (PE125) | SOAPdenovo | 264 | 166 | 118 | 6169 | 7 | 6128 | 0.11% |
Trinity | 321 | 325 | 279 | 9695 | 173 | 29,916 | 0.58% | |
IDBA-UD | 408 | 391 | 364 | 8541 | 28 | 2366 | 1.18% | |
Chang-2 (PE125) | SOAPdenovo | 263 | 166 | 116 | 8469 | 6 | 5829 | 0.10% |
Trinity | 338 | 339 | 289 | 9699 | 306 | 31,574 | 0.97% | |
IDBA-UD | 456 | 423 | 389 | 8446 | 46 | 2584 | 1.78% | |
duan-1 (PE125) | SOAPdenovo | 281 | 189 | 135 | 4966 | 11 | 3688 | 0.30% |
Trinity | 329 | 331 | 284 | 9694 | 260 | 34,340 | 0.76% | |
IDBA-UD | 431 | 418 | 379 | 8533 | 49 | 2722 | 1.80% | |
duan-2 (PE125) | SOAPdenovo | 285 | 194 | 141 | 7173 | 11 | 3660 | 0.30% |
Trinity | 323 | 326 | 280 | 9696 | 220 | 33,831 | 0.65% | |
IDBA-UD | 407 | 399 | 363 | 8489 | 32 | 2748 | 1.16% | |
AC142 (PE150) | SOAPdenovo | 454 | 459 | 431 | 1114 | 4 | 262 | 1.53% |
Trinity | 444 | 424 | 341 | 4534 | 2501 | 61,707 | 4.05% | |
IDBA-UD | 540 | 543 | 470 | 4297 | 277 | 5237 | 5.29% | |
PVS (PE150) | SOAPdenovo | 427 | 367 | 392 | 3034 | 19 | 2071 | 0.92% |
Trinity | 509 | 466 | 369 | 9727 | 6561 | 112,067 | 5.85% | |
IDBA-UD | 543 | 515 | 460 | 5618 | 733 | 15,540 | 4.72% | |
Ri-1 (PE150) | SOAPdenovo | 446 | 408 | 423 | 910 | 0 | 285 | 0.00% |
Trinity | 446 | 425 | 343 | 4945 | 2341 | 60,717 | 3.86% | |
IDBA-UD | 523 | 530 | 464 | 4319 | 231 | 5325 | 4.34% | |
Ri-2 (PE150) | SOAPdenovo | 440 | 401 | 410 | 1108 | 3 | 370 | 0.81% |
Trinity | 445 | 424 | 341 | 4481 | 2599 | 65,451 | 3.97% | |
IDBA-UD | 548 | 551 | 476 | 3897 | 309 | 5601 | 5.52% | |
E108 (PE150) | SOAPdenovo | 453 | 458 | 426 | 2708 | 9 | 999 | 0.90% |
Trinity | 454 | 430 | 345 | 8496 | 3551 | 84,627 | 4.20% | |
IDBA-UD | 434 | 342 | 245 | 4651 | 315 | 16,785 | 1.88% | |
E20 (PE150) | SOAPdenovo | 452 | 467 | 432 | 2062 | 12 | 706 | 1.70% |
Trinity | 463 | 435 | 349 | 8471 | 3997 | 93,936 | 4.26% | |
IDBA-UD | 497 | 491 | 440 | 8435 | 324 | 10,235 | 3.17% |