samples

software

contig N50 (bp)

mean of contig length (bp)

median of contig length (bp)

max contig length (bp)

contig number of over 1000 bp

total contig number

ratio of contig over 1000 bp to total contig

CW2-1 (PE125)

SOAPdenovo

276

179

138

1484

2

2882

0.07%

Trinity

321

325

277

8469

198

23,571

0.84%

IDBA-UD

425

422

387

3661

26

1737

1.50%

CW2-2 (PE125)

SOAPdenovo

277

178

135

1702

3

3082

0.10%

Trinity

322

324

278

8160

1138

47,198

2.41%

IDBA-UD

426

425

389

3101

23

1811

1.27%

Chang-1 (PE125)

SOAPdenovo

264

166

118

6169

7

6128

0.11%

Trinity

321

325

279

9695

173

29,916

0.58%

IDBA-UD

408

391

364

8541

28

2366

1.18%

Chang-2 (PE125)

SOAPdenovo

263

166

116

8469

6

5829

0.10%

Trinity

338

339

289

9699

306

31,574

0.97%

IDBA-UD

456

423

389

8446

46

2584

1.78%

duan-1 (PE125)

SOAPdenovo

281

189

135

4966

11

3688

0.30%

Trinity

329

331

284

9694

260

34,340

0.76%

IDBA-UD

431

418

379

8533

49

2722

1.80%

duan-2 (PE125)

SOAPdenovo

285

194

141

7173

11

3660

0.30%

Trinity

323

326

280

9696

220

33,831

0.65%

IDBA-UD

407

399

363

8489

32

2748

1.16%

AC142 (PE150)

SOAPdenovo

454

459

431

1114

4

262

1.53%

Trinity

444

424

341

4534

2501

61,707

4.05%

IDBA-UD

540

543

470

4297

277

5237

5.29%

PVS (PE150)

SOAPdenovo

427

367

392

3034

19

2071

0.92%

Trinity

509

466

369

9727

6561

112,067

5.85%

IDBA-UD

543

515

460

5618

733

15,540

4.72%

Ri-1 (PE150)

SOAPdenovo

446

408

423

910

0

285

0.00%

Trinity

446

425

343

4945

2341

60,717

3.86%

IDBA-UD

523

530

464

4319

231

5325

4.34%

Ri-2 (PE150)

SOAPdenovo

440

401

410

1108

3

370

0.81%

Trinity

445

424

341

4481

2599

65,451

3.97%

IDBA-UD

548

551

476

3897

309

5601

5.52%

E108 (PE150)

SOAPdenovo

453

458

426

2708

9

999

0.90%

Trinity

454

430

345

8496

3551

84,627

4.20%

IDBA-UD

434

342

245

4651

315

16,785

1.88%

E20 (PE150)

SOAPdenovo

452

467

432

2062

12

706

1.70%

Trinity

463

435

349

8471

3997

93,936

4.26%

IDBA-UD

497

491

440

8435

324

10,235

3.17%