| Year | Method | Database | Performance (AUPR) |
| 2022 | GCNMK | DrugBank | 0.9508 |
| 2022 | deepMDDIs | DrugBank | 0.962 |
| 2019 | Conv-LSTM | DrugBank、KEGG Drug、PharmGKB和OFFSIDES | 0.94 |
| 2019 | GCNN + Attentive pooling | DrugBank | 0.986 |
| 2015 | HOGCN | BioSNAP-DDIs | 0.897 ± 0.003 |